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Shopify + Fortnox Integration Guide

The following guide outlines the required preparations, onboarding steps, and operational workflow for the Shopify + Fortnox integration via Junipeer.

Preparations

Prepare Fortnox

Follow this guide:
https://knowledge.junipeer.io/knowledge-base/guide-fortnox-settings-before-starting-integration

Prepare Shopify

Get the API key
https://knowledge.junipeer.io/knowledge-base/how-to-get-the-shopify-api-key

Get Started - Onboarding

Push get started in the left menu.

1. Select What You Want to Sync

If you just want to sync bookkeeping. Select these: 

  • Orders/Invoices -> Fortnox

  • Refunds -> Fortnox

  • Payouts -> Fortnox

2. Connect Shopify and Fortnox

2a. Connect Shopify

  • Click on Shopify logo and enter the API credentials from Shopify.

2b. Connect Fortnox

  • Click on Fortnox logo and log in with the Fortnox integration user.

3. Configure Integration Steps

Sales account OSS Guide

See the OSS guide for Fortnox

 



4. Test the Integration

Perform end-to-end validations:

  • For example create a test order in Shopify. Note that this is the long order ID located in the adress bar of your Shopify.

5. Activate Sync

  • Start the integration to enable live syncing

Other Useful Information

Retroactive Sync

You can sync past Shopify orders using order IDs or date ranges.

Multi-Channel Support

If you operate multiple Shopify stores, Junipeer can handle them under one account as long as they belong to the same company or you have an appropriate contractual setup.

How It Works

1. Order Created

When an order is placed in Shopify, Junipeer imports it and creates a corresponding Order in Fortnox. Depending on configuration, invoices may also be created immediately or at fulfillment.

2. Invoice Created

  • Invoice is Created when order is captured in Shopify

3. Refund Handling

If a refund occurs in Shopify:

  • A credit invoice is created in Fortnox and linked to the original invoice.

  • Note: Fortnox does not support multiple credit invoices linked to a single invoice.

4. Payment Reconciliation

If you use Shopify payments we have it built in the connector.

If the store uses external PSPs (e.g., Svea, Walley, Qliro), payment reports can be matched to corresponding invoices and write-offs created for payment provider fees. This requires an additional connector which you can subscribe to separately.